FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index16_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18318752 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 4821475 | 3.070908 | 4.7464724 | 2 |
| GAAGA | 3828625 | 2.5481753 | 5.028704 | 2 |
| CCAGG | 3795405 | 2.537988 | 5.3018494 | 1 |
| CTTCT | 3999275 | 2.5059085 | 5.706508 | 1 |
| CCTGG | 3772485 | 2.505011 | 5.978435 | 1 |
| CTGGA | 3628725 | 2.4038851 | 8.8986025 | 1 |
| CTGCT | 3616975 | 2.3330743 | 5.1942725 | 1 |
| TCCAG | 3574370 | 2.3218374 | 5.7068377 | 2 |
| CTCCT | 3582125 | 2.265669 | 7.739679 | 1 |
| CTGGG | 3308510 | 2.2404842 | 8.520947 | 1 |
| CAGGA | 3316410 | 2.2124689 | 5.552442 | 1 |
| CTTCA | 3463465 | 2.1854658 | 5.780707 | 1 |
| CTCCA | 3385590 | 2.1564498 | 8.36049 | 1 |
| CCCAG | 3282140 | 2.152094 | 7.357615 | 1 |
| CAGAA | 3211485 | 2.0958736 | 5.1605606 | 1 |
| CTCTG | 3105905 | 2.0034165 | 6.37206 | 1 |
| CTGGC | 2815210 | 1.8693599 | 5.5703716 | 1 |
| TGGAA | 2788560 | 1.8429654 | 5.197999 | 2 |
| CTGAA | 2832645 | 1.8357012 | 5.557613 | 1 |
| CTCAG | 2653080 | 1.7233863 | 6.2825875 | 1 |
| CTTTG | 2650775 | 1.6938857 | 5.0238056 | 1 |
| CTGGT | 2490315 | 1.6381913 | 5.1994653 | 1 |
| CTTGG | 2475370 | 1.6283603 | 5.4857893 | 1 |
| CTCCC | 2401075 | 1.5329684 | 5.020469 | 1 |